# NeutralityTest User's Guide

> NeutralityTest User's Guide (Version 1.1)

> Copyright 2001 University of Texas at Houston, 6901 Bertner Ave., Houston, Texas, 77030 U.S.A., and Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China. All rights reserved.

> # Contents

> ## Preface

> ## Installation

> - Auto install
> - Manually install

> ## How to use it?

>   Prepare your data
>   Input and append data
>   Show and edit data
>   Summary of data
>   Tajima, Fu & Li's test, H test
>   McDonald-Kreitman's test
>   Hudson-Kreitman-Aquadé's test
>   Li-Wu-Luo1993's test
>   Suzuki & Gojobori's test
>   Load and edit a tree

> ## Sequence Data

>   XML, exchangeable format
>   Phylip
>   Mega
>   Arlequin
>   GenBank
>   One line, one sequence
>   Multiple individual sequences

> ## Tajima, Fu and Li Tests

>   Tajima's D test
>   Fu and Li's D test
>   Fu and Li's F test
>   Fu and Li's Ds test
>   Fu and Li's Fs test
>   Fu's Fs test
>   Fay & Wu's H test

> ## Other Neutrality Tests

>   McDonald-Kreitman
>   Hudson-Kreitman-Aquadé
>   Li-Wu-Luo 1993
>   Suzuki and Gojobori 1999

> ## Others

>   Contact and cite information
>   What's next?
>   References
>   Fixed bugs